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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015936225.1_cds_XP_016481867.1_73153
CDS Infomation

[gene=LOC107802807] [db_xref=GeneID:107802807] [protein=probable pectate lyase 8] [protein_id=XP_016481867.1] [location=complement(join(186702..186923,187423..187561,187654..187757,187852..188494,190810..190887,191332..191385,191655..191734))] [gbkey=CDS]
Sequence

ATGGCGGTCTCTTGGAGATCATGTCTATCATTGCTAGTTGTGATAATGCTAGCCATCAAT
AATGTCACTGCCAGTACCAGTCCTGAAGAAGCAAAGCAATTTCAGAGCTTAAACATCTCG
ACAATGGCGAACAGGTTAAACGAAGAAAATGTACCAAACCATGAAAAACATGCTGTTGAT
GATCCAGATATGGTTGCTTCCATGGTAGACATGAGCATTCGGAATAGTACAGAGAGGAGG
AAATTGGGTTTTTTCTCATGTGGAACTGGAAATCCTATTGACGATTGCTGGCGCTGTGAC
CGCAATTGGCAACGTAACCGCAAGCGCCTAGCCGATTGTGCTATTGGATTTGGACGCAAT
GCCATTGGTGGCCGCGATGGCAAGTACTACGTTGTCACTGACCCAGGTGACGATGACCCC
GTAAATCCCAGACCTGGAACACTTCGTCATGCTGTAATTCAGGACAGACCATTGTGGATT
GTGTTTAAACGGGACATGGTCATTACACTTAAGCAAGAGCTTATAATGAACAGTTTCAAG
ACAATTGATGGACGTGGTGTGAATGTTCATATTGCCAATGGGGCTTGCATAACTGTCCAA
TTTGTTACTAATATCATTATTCATGGCATCAATATTCATGATTGTAAACCAACTGGTAAT
GCCATGGTTCGTAGCTCGCCAGGTCACTATGGTTGGAGGACAATGGCTGATGGTGATGCC
ATTTCCATCTTTGGGTCCAGCCACATTTGGGTTGACCACAACTCTCTCGCTAACTGTGCT
GATGGCCTCATTGATGCTATCATGGGATCAACTGCAATTACCATCTCCAACAATTATTTT
ACCCATCACAATGAGGTGATGCTATTGGGTCACAGCGACTCCTATGTTAGAGACAAGATT
ATGCAAGTGACTATTGCCTACAACCATTTTGGTGAGGGTCTCATTCAGAGAATGCCAAGG
TGTAGACATGGTTATTTCCATGTGGTGAACAATGACTATACACACTGGGAGATGTATGCT
ATTGGTGGCAGTGCTTCTCCTACAATTAACAGCCAAGGCAACAGATACCTTGCCCCAGCC
AACCCATTTGCCAAACAGGTGACACATAGAGTGGAACCATCAGAAGGAGAGTGGAAGCGT
TGGAACTGGAGATCAGATGGAGACCTTATGCTTAATGGAGCCTACTTTACCCCATCCGGA
CGTGGTGCTGGAGCCAGTTATGCTAGGGCATCAAGCTTAGCAGCCAAGTCCTCTTCACTA
GTTGGCACTCTTACCTCAAATGCTGGTGCACTTACCTGCCGCAGGGGCCGCCAATGTTAA

Peptide Sequence

PEP ID

XP_016481867.1
PEP Infomation

PREDICTED: probable pectate lyase 8 [Nicotiana tabacum]
Sequence

MAVSWRSCLSLLVVIMLAINNVTASTSPEEAKQFQSLNISTMANRLNEENVPNHEKHAVD
DPDMVASMVDMSIRNSTERRKLGFFSCGTGNPIDDCWRCDRNWQRNRKRLADCAIGFGRN
AIGGRDGKYYVVTDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFK
TIDGRGVNVHIANGACITVQFVTNIIIHGINIHDCKPTGNAMVRSSPGHYGWRTMADGDA
ISIFGSSHIWVDHNSLANCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKI
MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPA
NPFAKQVTHRVEPSEGEWKRWNWRSDGDLMLNGAYFTPSGRGAGASYARASSLAAKSSSL
VGTLTSNAGALTCRRGRQC

Transcript Sequence

Gene sequence data has not been registered.